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Publications of Andre Kahles

2012 Smith, L, Hartmann, L, Drewe, P, Bohnert, R, Kahles, A, Lanz, C, and Rätsch, G (2012).
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
RNA Biology, 9(5).
Online access Supplementary website
2011 Schultheiss, SJ, Jean, G, Behr, J, Drewe, P, Görnitz, N, Kahles, A, Mudrakarta, P, Sreedharan, VT, Zeller, G, and Rätsch, G (2011).
oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS data
In: 7th ISCB Student Council Symposium, ed. by Priscilla Grynberg, vol. 12(Suppl 11), pp. A7, ISCBSC, Vienna, Austria, BMC Bioinformatics.
Gan, X, Stegle, O, Behr, J, Steffen, JG, Drewe, P, Hildebrand, KL, Lyngsoe, R, Schultheiss, SJ, Osborne, EJ, Sreedharan, V, Kahles, A, Bohnert, R, Jean, G, Derwent, P, Kersey, P, Belfield, EJ, Harberd, NP, Kemen, E, Toomajian, C, Kover, PX, Clark, RM, Ratsch, G, and Mott, R (2011).
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Nature, 477:419–423.
Online access Supplementary website Printable file
Görnitz, N, Widmer, C, Zeller, G, Kahles, A, Sonnenburg, S, and Rätsch, G (2011).
Hierarchical Multitask Structured Output Learning for Large-scale Sequence Segmentation
In: Advances in Neural Information Processing Systems (NIPS'11), NIPS Foundation.
Printable file
2010 Jean, G, Kahles, A, Sreedharan, VT, De Bona, F, and Rätsch, G (2010).
RNA-Seq Read Alignments with PALMapper
Curr. Protoc. Bioinform., 32:11.6.1- 11.6.37.
Supplementary website Printable file