Publications of Christian Widmer

2012	Widmer, C, Kloft, M, Görnitz, N, and Rätsch, G (2012). Efficient Training of Graph-Regularized Multitask SVMs In: Proceedings of ECML 2012, Springer. Lecture Notes in Computer Science. Printable file

Widmer, C and Rätsch, G (2012). Multitask Learning in Computational Biology In: ICML 2011 Unsupervised and Transfer Learning Workshop, ed. by Isabelle Guyon and Danny Silver, vol. 27, pp. 207-216, JMLR W&CP. Printable file

2011	Görnitz, N, Widmer, C, Zeller, G, Kahles, A, Sonnenburg, S, and Rätsch, G (2011). Hierarchical Multitask Structured Output Learning for Large-scale Sequence Segmentation In: Advances in Neural Information Processing Systems (NIPS'11), NIPS Foundation. Printable file

2010	Widmer, C, Leiva, J, Altun, Y, and Rätsch, G (2010). Leveraging Sequence Classification by Taxonomy-based Multitask Learning In: Proc. RECOMB'10. Printable file

Sonnenburg, S, Rätsch, G, Henschel, S, Widmer, C, Behr, J, Zien, A, de Bona, F, Binder, A, Gehl, C, and Franc, V (2010). The SHOGUN Machine Learning Toolbox Journal of Machine Learning Research, 11:1799-1802. Printable file

Widmer, C, Toussaint, N, Altun, Y, Kohlbacher, O, and Rätsch, G (2010). Novel Machine Learning Methods for MHC Class I Binding Prediction In: Proc. Pattern Recognition in Bioinformatics, Springer. Lecture Notes in Computer Science. Printable file

Toussaint, NC, Widmer, C, Kohlbacher, O, and Rätsch, G (2010). Exploiting Physico-Chemical Properties in String Kernels BMC Bioinformatics, 11(Suppl. 8):S7. Online access Printable file

Widmer, C, Toussaint, N, Altun, Y, and Rätsch, G (2010). Inferring Latent Task Structure for Multi-Task Learning by Multiple Kernel Learning BMC Bioinformatics, 11(Suppl. 8):S5. Online access Printable file

Spencer, WC, Zeller, G, Watson, JD, Henz, SR, Watkins, KL, McWhirter, RD, Petersen, S, Sreedharan, VT, Widmer, C, Reinke, V, Petrella, L, Strome, S, Von Stetina, S, Katz, M, Rätsch, G, and Miller III, DM (2010). A Spatial and Temporal Map of C. elegans Gene Expression Genome Research. Supplementary website Printable file

2009	Zeller, G, Henz, SR, Widmer, CK, Sachsenberg, T, Rätsch, G, Weigel, D, and Laubinger, S (2009). Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole genome tiling arrays Plant Journal, 58(6):1068-1082. Online access Printable file

2008

Laubinger, S, Zeller, G, Henz, S, Sachsenberger, T, Widmer, C, Naouar, N, Vuylsteke, M, Schölkopf, B, Rätsch, G, and Weigel, D (2008). At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana Genome Biology, 9:R112. Online access Printable file

Schweikert, G, Widmer, C, Schölkopf, B, and Rätsch, G (2008). An empirical Analysis of Domain Adaptation Algorithms In: Proc. NIPS 2008. Advances in Neural Information Processing Systems. Online access Printable file

Widmer, C (2008). Domain Adaptation in Sequence Analysis Diplomarbeit, University of Tübingen. Printable file