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Jonas Behr
Bibliography
Improving Gene Finding Accuracy with Tiling Array and RNA-Seq Data
Publications of Jonas Behr
| 2011 |
Schultheiss, SJ, Jean, G, Behr, J, Drewe, P, Görnitz, N, Kahles, A, Mudrakarta, P, Sreedharan, VT, Zeller, G, and Rätsch, G
(2011). oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS data In: 7th ISCB Student Council Symposium, ed. by Priscilla Grynberg, vol. 12(Suppl 11), pp. A7, ISCBSC, Vienna, Austria, BMC Bioinformatics. |
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Gan, X, Stegle, O, Behr, J, Steffen, JG, Drewe, P, Hildebrand, KL, Lyngsoe, R, Schultheiss, SJ, Osborne, EJ, Sreedharan, V, Kahles, A, Bohnert, R, Jean, G, Derwent, P, Kersey, P, Belfield, EJ, Harberd, NP, Kemen, E, Toomajian, C, Kover, PX, Clark, RM, Ratsch, G, and Mott, R
(2011). Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature, 477:419–423. 
Online access
Supplementary website
Printable file
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| 2010 |
Sonnenburg, S, Rätsch, G, Henschel, S, Widmer, C, Behr, J, Zien, A, de Bona, F, Binder, A, Gehl, C, and Franc, V
(2010). The SHOGUN Machine Learning Toolbox Journal of Machine Learning Research, 11:1799-1802.
Printable file
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Behr, J, Bohnert, R, Zeller, G, Schweikert, G, Hartmann, L, and Rätsch, G
(2010). Next generation genome annotation with mGene.ngs BMC Bioinformatics, 11(S10):O8.
Online access
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| 2009 |
Schweikert, G, Behr, J, Zien, A, Zeller, G, Ong, CS, Sonnenburg, S, and Rätsch, G
(2009). mGene.web: a web service for accurate computational gene finding Nucleic Acids Research, 37(Web Server issue):W312–W316.
Online access
Printable file
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Schweikert, G, Zien, A, Zeller, G, Behr, J, Dieterich, C, Ong, CS, Philips, P, De Bona, F, Hartmann, L, Bohlen, A, Krüger, N, Sonnenburg, S, and Rätsch, G
(2009). mGene: Accurate SVM-Based Gene Finding with an Application to Nematode Genomes Genome Research, 19:2133-2143.
Online access
Supplementary website
Printable file
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Bohnert, R, Behr, J, and Rätsch, G
(2009). Transcript quantification with RNA-Seq data BMC Bioinformatics, 10(S13):P5.
Online access
Printable file
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| 2008 |
Behr, J
(2008). Improving Gene Finding Accuracy with Tiling Array and RNA-Seq Data Diplom Thesis, Jonas Behr. |
| 2007 |
Schweikert, G, Sonnenburg, S, Philips, P, Behr, J, and Rätsch, G
(2007). Accurate splice site prediction using support vector machines BMC Bioinformatics, 8(Suppl. 10):S7.
Online access
Supplementary website
Printable file
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