Tutorial paper about how to use PALMapper was published in Current Protocols in Bioinformatics
A tutorial paper "RNA-Seq Read Alignments with PALMapper" by Geraldine Jean, Andre Kahles, Vipin T. Sreedharan, Fabio De Bona and Gunnar Raetsch was published in Current Protocols in Bioinformatics.
The abstract and reference can be found here.
