All programs in this collection are free software: 
you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.


Copyright 2007 Alexander Zien and Cheng Soon Ong


Some notes on the repository
============================

Please cite:
Alexander Zien and Cheng Soon Ong, "Multiclass Multiple Kernel
Learning", ICML 2007.


kernels
-------
Code for computing the histogram kernel, doing pairwise blast (using
wu-blast) and obtaining the phylogenetic profiles.

mcmkl
-----
The multiclass multiple kernel learning code.

In config_binf.m, choose the datasetName, and set runDirectly = 1.
For model selection, param.nofFoldsVal = 3;
For test set evaluation, param.nofFoldsVal = 1;
The script documents how things are done.

scripts
-------
scripts for running experiments.

utils
-----
Files for loading data and computing performance.




