The mGene, mGene graph and mTim submissions to RGASP2 where based on a combination of the following tools:
- Palmapper for RNA-seq read mapping
- mGene for full genome annotation based on genomic and RNA-seq features
- mTim for genome segmentation into exonic, intronic and intergenic regions
- SplAdder for generation of alternative transcript isoforms
- rQuant for quantification of transcript isoforms
What's New?
