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Publications of Regina Bohnert

2012 Smith, L, Hartmann, L, Drewe, P, Bohnert, R, Kahles, A, Lanz, C, and Rätsch, G (2012).
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
RNA Biology, 9(5).
Online access Supplementary website
2011 Gan, X, Stegle, O, Behr, J, Steffen, JG, Drewe, P, Hildebrand, KL, Lyngsoe, R, Schultheiss, SJ, Osborne, EJ, Sreedharan, V, Kahles, A, Bohnert, R, Jean, G, Derwent, P, Kersey, P, Belfield, EJ, Harberd, NP, Kemen, E, Toomajian, C, Kover, PX, Clark, RM, Ratsch, G, and Mott, R (2011).
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Nature, 477:419–423.
Online access Supplementary website Printable file
2010 Stegle, O, Drewe, P, Bohnert, R, Borgwardt, K, and Rätsch, G (2010).
Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts
Preprint.
Online access Supplementary website Printable file
Rätsch, G and Bohnert, R (2010).
Modern Methods for Transcriptome Reconstruction
In: Jahresbericht der Max-Planck-Gesellschaft, Max-Planck-Gesellschaft, München.
Online access Printable file
Bohnert, R and Rätsch, G (2010).
rQuant.web: a tool for RNA-Seq-based transcript quantitation
Nucleic Acids Research, 38(Suppl 2):W348-51.
Online access Supplementary website Printable file
Behr, J, Bohnert, R, Zeller, G, Schweikert, G, Hartmann, L, and Rätsch, G (2010).
Next generation genome annotation with mGene.ngs
BMC Bioinformatics, 11(S10):O8. Online access
2009 McNally, KL, Childs, KL, Bohnert, R, Davidson, RM, Zhao, K, Ulat, VJ, Zeller, G, Clark, RM, Hoen, DR, Bureau, TE, Stokowski, R, Ballinger, DG, Frazer, KA, Cox, DR, Padhukasahasram, B, Bustamante, CD, Weigel, D, Mackill, DJ, Bruskiewich, RM, Rätsch, G, Buell, CR, Leung, H, and Leach, JE (2009).
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Proceedings of the National Academy of Sciences, 106(30):12273-8.
Online access Supplementary website Printable file
Bohnert, R, Behr, J, and Rätsch, G (2009).
Transcript quantification with RNA-Seq data
BMC Bioinformatics, 10(S13):P5.
Online access Printable file
2008 Bohnert, R, Zeller, G, Clark, RM, Childs, KL, Ulat, V, Stokowski, R, Ballinger, D, Frazer, K, Cox, D, Bruskiewich, R, Buell, CR, Leach, J, Leung, H, McNally, KL, Weigel, D, and Rätsch, G (2008).
Revealing Sequence Variation Patterns in Rice with Machine Learning Methods
BMC Bioinformatics, 9(S10):O8.
Online access Printable file
2007 Bohnert, R (2007).
Polymorphism Detection in Rice
Diplom thesis, Friedrich Miescher Laboratory of the Max Planck Society and Eberhard Karls Universität Tübingen.
Printable file