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Publications of Fabio De Bona

2010 Sonnenburg, S, Rätsch, G, Henschel, S, Widmer, C, Behr, J, Zien, A, de Bona, F, Binder, A, Gehl, C, and Franc, V (2010).
The SHOGUN Machine Learning Toolbox
Journal of Machine Learning Research, 11:1799-1802.
Printable file
Jean, G, Kahles, A, Sreedharan, VT, De Bona, F, and Rätsch, G (2010).
RNA-Seq Read Alignments with PALMapper
Curr. Protoc. Bioinform., 32:11.6.1- 11.6.37.
Supplementary website Printable file
De Bona, F, Hall, K, Riezler, S, Ciaramita, M, Herdagdelen, A, and Holmqvist, M (2010).
Learning Dense Models of Query Similarity from User Click Logs
In: NAACL 2010.
2009 Schweikert, G, Zien, A, Zeller, G, Behr, J, Dieterich, C, Ong, CS, Philips, P, De Bona, F, Hartmann, L, Bohlen, A, Krüger, N, Sonnenburg, S, and Rätsch, G (2009).
mGene: Accurate SVM-Based Gene Finding with an Application to Nematode Genomes
Genome Research, 19:2133-2143.
Online access Supplementary website Printable file
2008 De Bona, F, Ossowski, S, Schneeberger, K, and Rätsch, G (2008).
QPALMA: Optimal Spliced Alignments of Short Sequence Reads
In: Bioinformatics/Proc. ECCB'08, Oxford University Press.
Online access Printable file
De Bona, F, Ossowski, S, Schneeberger, K, and Rätsch, G (2008).
QPALMA:: Optimal Spliced Alignments of Short Sequence Reads
In: BMC Bioinformatics, vol. 9((Suppl 10)), pp. O7, BioMed Central Ltd.
Online access Printable file
2007 Zien, A, De Bona, F, and Ong, CS (2007).
Training and Approximation of a Primal Multiclass Support Vector Machine
In: 12th International Conference on Applied Stochastic Models and Data Analysis (ASMDA).
Online access Printable file