Publications of Cheng Soon Ong

2011	Zhong, Y, Chang, X, Cao, X, Zhang, Y, and et al (2011). Comparative Proteogenomic Analysis of the Leptospira interrogans Virulence Attenuated Strain IPAV against the Pathogenic Strain 56601 Cell Res.

2010	Zhao, W, Zhong, Y, Yuan, H, Wang, J, and et al (2010). Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism Cell Res.

Lv, L, Sun, Q, Fan, X, zhong, Y, and et al (2010). Mycobacterial MazG is a novel NTP pyrophosphohydrolase involved in oxidative stress response J Biol Chem.

2009	Yao, Y, Xie, Y, Perace, D, Zhong, Y, and et al (2009). The type III secretion system is involved in the invasion and intracellular survival of Escherichia coli K1 in human brain microvascular endothelial cells FEMS Microbiol Lett.

Schweikert, G, Behr, J, Zien, A, Zeller, G, Ong, CS, Sonnenburg, S, and Rätsch, G (2009). mGene.web: a web service for accurate computational gene finding Nucleic Acids Research, 37(Web Server issue):W312–W316. Online access Printable file

Schweikert, G, Zien, A, Zeller, G, Behr, J, Dieterich, C, Ong, CS, Philips, P, De Bona, F, Hartmann, L, Bohlen, A, Krüger, N, Sonnenburg, S, and Rätsch, G (2009). mGene: Accurate SVM-Based Gene Finding with an Application to Nematode Genomes Genome Research, 19:2133-2143. Online access Supplementary website Printable file

2008	Zhu, Y, Li, Q, Wang, L, Zhong, Y, and et al (2008). Gene expression profiling-based in silico approach to identify potential vaccine candidates and drug targets against B. pertussis and B. parapertussis OMICS.

Ben-Hur, A, Ong, CS, Sonnenburg, S, Schölkopf, B, and Rätsch, G (2008). Support Vector Machines and Kernels for Computational Biology PLoS Computational Biology, 4(10):e1000173. Online access Printable file

Ong, CS and Zien, A (2008). An Automated Combination of Kernels for Predicting Protein Subcellular Localization In: Proceedings of the 8th Workshop on Algorithms in Bioinformatics (WABI), pp. 186-179, Springer. Lecture Notes in Bioinformatics. Online access Printable file

2007	Schulze, U, Hepp, B, Ong, CS, and Rätsch, G (2007). PALMA: mRNA to Genome Alignments using Large Margin Algorithms Bioinformatics, 23(15):1892-1900. Online access Printable file

Sonnenburg, S, Braun, ML, Ong, CS, Bengio, S, Bottou, L, Holmes, G, LeCun, Y, Müller, K, Pereira, F, Rasmussen, CE, Rätsch, G, Schölkopf, B, Smola, A, Vincent, P, Weston, J, and Williamson, RC (2007). The Need for Open Source Software in Machine Learning Journal of Machine Learning Research, 8:2443-2466. Online access Printable file

Zien, A, De Bona, F, and Ong, CS (2007). Training and Approximation of a Primal Multiclass Support Vector Machine In: 12th International Conference on Applied Stochastic Models and Data Analysis (ASMDA). Online access Printable file

Zien, A and Ong, CS (2007). Multiclass Multiple Kernel Learning In: Proceedings of the 24th International Conference on Machine Learning (ICML), pp. 1191-1198, New York, NY, USA, ACM Press. Online access

2006	Rätsch, G, Hepp, B, Schulze, U, and Ong, CS (2006). PALMA: Perfect Alignments using Large Margin Algorithms In: German Conference on Bioinformatics, pp. 104-113, Berlin,Heidelberg, Springer Verlag. LNCS. Online access Printable file

Zien, A, Ong, CS, and Rätsch, G (2006). Towards the Inference of Graphs on Ordered Vertices Max Planck Institute for biological Cybernetics, Research Note(150), Tübingen, Germany. Online access Printable file

2005	Canu, S, Ong, CS, and Mary, X (2005). Splines with Non Positive Kernels In: 5th International ISAAC Congress.

Ong, CS, Smola, AJ, and Williamson, RC (2005). Learning the Kernel with Hyperkernels Journal of Machine Learning Research, 6:1043–1071.

Borgwardt, KM, Ong, CS, Sch\"onauer, S, Vishwanathan, S, Smola, AJ, and Kriegel, H (2005). Protein Function Prediction via Graph Kernels In: Proceedings of the International Conference on Intelligent Systems for Molecular Biology.

2004	Ong, CS, Mary, X, Canu, S, and Smola, AJ (2004). Learning with Non-Positive Kernels In: International Conference on Machine Learning, pp. 639–646.

2003	Ong, CS and Smola, AJ (2003). Machine Learning with Hyperkernels In: International Conference of Machine Learning, pp. 568–575.

Ong, CS, Smola, AJ, and Williamson, RC (2003). Hyperkernels In: Advances in Neural Information Processing Systems 15, pp. 495–502.

Jeong, D, Kim, Y, Cho, S, and Shin, H (2003). A Study on Rainfall-Runoff Models for Improving Ensemble Streamflow Prediction: 1. Rainfall-runoff Models Using Artificial Neural Networks Journal of the Korean Society of Civil Engineers, 23(6B):521-530.

2001	Wong, FW, Supian, AS, Ismail, AF, Lai, WK, and Ong, CS (2001). Enhanced User Authentication through Typing Biometrics with Artificial Neural Networks and K-Nearest Neighbor Algorithm In: Proceedings of the 35th Asilomar Conference on Signals, Systems & Computers.

2000	Tai, S, Ong, C, and Abdullah, NA (2000). On Designing an Automated Malaysian Stemmer for the Malay Language In: Proceedings of the Fifth International Workshop on Information Retrieval with Asian Languages.

Ong, CS and Lai, WK (2000). Enhanced Password Authentication Through Typing Biometrics with K-Means Clustering Algorithm In: World Automation Congress.

Ong, CS, Wong, F, and Lai, WK (2000). A High Resolution and Accurate Pentium Based Timer In: National Real Time Technology and Applications Symposium, Malaysia.

Ong, CS (2000). Knowledge Discovery in Databases: An Information Retrieval Perspective Malaysian Journal of Computer Science, 13(2).

1999	Maisuria, L, Ong, CS, and Lai, W (1999). A Comparison of Artificial Neural Networks and Cluster Analysis for Typing Biometrics Authentication In: International Joint Conference on Neural Networks.