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Publications of Sebastian Schultheiss

2011 Schultheiss, SJ, Jean, G, Behr, J, Drewe, P, Görnitz, N, Kahles, A, Mudrakarta, P, Sreedharan, VT, Zeller, G, and Rätsch, G (2011).
oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS data
In: 7th ISCB Student Council Symposium, ed. by Priscilla Grynberg, vol. 12(Suppl 11), pp. A7, ISCBSC, Vienna, Austria, BMC Bioinformatics.
Gan, X, Stegle, O, Behr, J, Steffen, JG, Drewe, P, Hildebrand, KL, Lyngsoe, R, Schultheiss, SJ, Osborne, EJ, Sreedharan, V, Kahles, A, Bohnert, R, Jean, G, Derwent, P, Kersey, P, Belfield, EJ, Harberd, NP, Kemen, E, Toomajian, C, Kover, PX, Clark, RM, Ratsch, G, and Mott, R (2011).
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Nature, 477:419–423.
Online access Supplementary website Printable file
Schultheiss, SJ (2011).
Ten Simple Rules for Providing a Scientific Web Resource
PLoS Computational Biology, 7(5):e1001126.
Schultheiss, SJ, Münch, M, Andreeva, GD, and Rätsch, G (2011).
Persistence and Availability of Web Services in Computational Biology
PLoS ONE, 6(9):e24914.
2010 Busch, W, Miotk, A, Ariel, F, Forner, J, Daum, G, Suzaki, T, Schuster, C, Schultheiss, SJ, Leibfried, A, Haubeiß, S, Ha, N, Chan, R, and Lohmann, J (2010).
Transcriptional Control of a Plant Stem Cell Niche
Developmental Cell, 18(5):849-861.
Supplementary website Printable file
Schultheiss, SJ (2010).
Kernel-based identification of regulatory modules
In: Computational Biology of Transcription Factor Binding, ed. by Istvan Ladunga. Springer, Heidelberg, chap. 13, pp. 213-224.
Zhao, Z, Andersen, S, Ljung, K, Dolezal, K, Miotk, A, Schultheiss, SJ, and Lohmann, JU (2010).
Hormonal control of the shoot stem cell niche
Nature, 465:1089–1092. Online access
2009 Schultheiss, SJ, Busch, W, Lohmann, JU, Kohlbacher, O, and Rätsch, G (2009).
KIRMES: Kernel-based identification of regulatory modules in euchromatic sequences
Bioinformatics, 25(16):2126-2133.
Online access Printable file
Schultheiss, SJ, Busch, W, Lohmann, JU, Kohlbacher, O, and Rätsch, G (2009).
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences
BMC Bioinformatics, 10(Suppl 13):O1.
Online access Printable file
2008 Schultheiss, SJ, Busch, W, Lohmann, JU, Kohlbacher, O, and Rätsch, G (2008).
KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences
In: German Conference on Bioinformatics, ed. by A. Beyer and M. Schroeder, pp. 158-167, GI, Heidelberg, Springer Verlag. Lecture notes in Informatics.
Online access Printable file
2007 Schultheiss, SJ (2007).
Inferring Regulatory Networks
Diplom thesis, University of Tübingen, Tübingen, Germany.
Printable file